Meets Thursday 9:00-10:00 Physics Room 1131
Instructor: Prof. Keith Lidke
Room 1140, Physics and Astronomye-mail: klidke@unm.edu
phone: (505)277-0302
Overview
The format will be one ~ 30 minute presentation per week of either a research report or a journal paper presentation. Topics will be any aspect of fluorescence super-resolution imaging, single particle tracking, single molecule imaging or spectral imaging. After the contributed talk, I will discuss topics in computing/programming related to the work in my lab. Topics will include object oriented programming in Matlab, generating Matlab mex files, instrument control, using Microsoft Visual Studio, and GPU programming using NVIDIA's CUDA. We may also have a few full-hour talks by external speakers during the semester.Registration is not required for attendance or participation, but please register if you can.
Grading
Credit for the seminar requires attendance and one research or journal presentation.Fall Semester Schedule
| Date | Presenter | Topic | Compute Topic |
|---|---|---|---|
| 21-Jan | Organizational Meeting | ||
| 28-Jan | Dr. Marjolein Meddens | Journal Paper: Ultrahigh-throughput single-molecule spectroscopy and spectrally resolved super-resolution microscopy | |
| 4-Feb | Mohamad Fazel | "Control Theory, the PID circuit, and Application to Active Image Stabilization" | |
| 11-Feb | Hanieh Farsibaf | Journal Paper: A review of progress in single particle tracking: from methods to biophysical insights. | MATLAB mex files. |
| 18-Feb | Dr. Jingyao Li | "Multi-color fluorescence in-situ hybridization (M-FISH) image analysis based on sparse representation models." | |
| 25-Feb | Farzin Farzam | Journal Paper: Precise Three-Dimensional Scan-Free Multiple-Particle Tracking over Large Axial Ranges with Tetrapod Point Spread Functions. | NA |
| 3-Mar | No Class: BPS Meeting | ||
| 10-Mar | BPS Meeting Recap | ||
| 17-Mar | Peter Relich | Journal Paper: Inference in particle tracking experiments by passing messages between images. | |
| 24-Mar | Prof. Lidke | Various lab related topics. | Intro to Python |
| 31-Mar | Dr. Marjolein Meddens | Journal Presentation: High-density three-dimensional localization microscopy across large volumes. | TBD |
| 7-Apr | Farzin Farzam | "Sequential Superresolution Imaging" | TBD |
| 14-Apr | Dr. Mark Olah (Postponed) | Research Presentation | TBD |
| 21-Apr | Hanieh Farsibaf | "Simultaneous Imaging and Labeling of Actin in HeLa Cells" | TBD |
| 28-Apr | Genevieve Phillips | "FRET with FAPs" | TBD |
| 5-May | Mohamad Fazel | "Introduction to Wavelets" | TBD |
| 12-May | Peter Relich | "The Two Frame Tracking Problem" | TBD |