Publications

Google Scholar: http://scholar.google.com/citations?user=kYEBbeEAAAAJ&hl=en

Preprints

  1. Heintzmann, R, Relich, P.K., Nieuwenhuizen, R.P.J, Lidke, K.A., Rieger, B., Calibrating photon counts from a single image. arXiv:1611.05654.
  2. Salazar-Cavazos, E., K.A. Lidke, and D.S. Lidke, Single Molecule Pull-down for Quantification of Membrane Receptor Multisite Phosphorylation. bioRxiv, 2017.
  3. Fazel, F., Wester, M.J., Rieger, B., Jungmann, R., Lidke, K.A., Sub-Nanometer Precision using Bayesian Grouping of Localizations. bioRxiv, 2019.

2019

  1. Fazel, M., M.J. Wester, H. Mazloom-Farsibaf, M.B.M. Meddens, A.S. Eklund, T. Schlichthaerle, F. Schueder, R. Jungmann, and K.A. Lidke, Bayesian Multiple Emitter Fitting using Reversible Jump Markov Chain Monte Carlo. Scientific Reports, 2019.
  2. Kumar, S., Y.X. Gu, Y.P. Abudu, J.A. Bruun, A. Jain, F. Farzam, M. Mudd, J.H. Anonsen, T.E. Rusten, G. Kasof, N. Ktistakis, K.A. Lidke, T. Johansen, and V. Deretic, Phosphorylation of Syntaxin 17 by TBK1 Controls Autophagy Initiation. Developmental Cell, 2019
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2018

  1. Heydarian, H., F. Schueder, M.T. Strauss, B. van Werkhoven, M. Fazel, K.A. Lidke, R. Jungmann, S. Stallinga, and B. Rieger, Template-free 2D particle fusion in localization microscopy. Nature Methods, 2018.
  2. Pallikkuth, S., C. Martin, F. Farzam, J.S. Edwards, M.R. Lakin, D.S. Lidke, and K.A. Lidke, Sequential super-resolution imaging using DNA strand displacement. PLOS ONE, 2018.
  3. Graus, M.S., M.J. Wester, D.W. Lowman, D.L. Williams, M.D. Kruppa, C.M. Martinez, J.M. Young, H.C. Pappas, K.A. Lidke, and A.K. Neumann, Mannan Molecular Substructures Control Nanoscale Glucan Exposure in Candida. Cell Reports, 2018.
  4. Brandsma, A.M., S.L. Schwartz, M.J. Wester, C.C. Valley, G.L.A. Blezer, G. Vidarsson, K.A. Lidke, T. ten Broeke, D.S. Lidke, and J.H.W. Leusen, Mechanisms of inside-out signaling of the high-affinity IgG receptor FcγRI. Science Signaling, 2018.
  5. Kumar, S., A. Jain, F. Farzam, J.Y. Jia, Y.X. Gu, S.W. Choi, M.H. Mudd, A. Claude-Taupin, M.J. Wester, K.A. Lidke, T.E. Rusten, and V. Deretic, Mechanism of Stx17 recruitment to autophagosomes via IRGM and mammalian Atg8 proteins. Journal of Cell Biology, 2018.

2017

  1. Schwartz, S.L., C. Cleyrat, M.J. Olah, P.K. Relich, G.K. Phillips, W.S. Hlavacek, K.A. Lidke, B.S. Wilson, and D.S. Lidke, Differential mast cell outcomes are sensitive to FcεRI-Syk binding kinetics. Molecular Biology of the Cell, 2017. 28(23): p. 3397-3414.
  2. Kimura, T., J.Y. Jia, A. Claude-Taupin, S. Kumar, S.W. Choi, Y.X. Gu, M. Mudd, N. Dupont, S.Y. Jiang, R. Peters, F. Farzam, A. Jain, K.A. Lidke, C.M. Adams, T. Johansen, and V. Deretic, Cellular and molecular mechanism for secretory autophagy. Autophagy, 2017. 13(6): p. 1084-1085.
  3. Kimura, T., J.Y. Jia, S. Kumar, S.W. Choi, Y.X. Gu, M. Mudd, N. Dupont, S.Y. Jiang, R. Peters, F. Farzam, A. Jain, K.A. Lidke, C.M. Adams, T. Johansen, and V. Deretic, Dedicated SNAREs and specialized TRIM cargo receptors mediate secretory autophagy. Embo Journal, 2017.

2016

  1. Meddens, M.B.M., S. Liu, P.S. Finnegan, T.L. Edwards, C.D. James, and K.A. Lidke, Single objective light-sheet microscopy for high-speed whole-cell 3D super-resolution. Biomedical Optics Express, 2016.
  2. Relich PK, Olah MJ, Cutler PJ, Lidke KA. Estimation of the diffusion constant from intermittent trajectories with variable position uncertainties. Phys Rev E. 2016.
  3. Lin J, Wester MJ, Graus MS, Lidke KA, Neumann AK. Nanoscopic cell wall architecture of an immunogenic ligand in Candida albicans during antifungal drug treatment. Mol Biol Cell. 2016.
  4. Termini, C.M., K.A. Lidke, and J.M. Gillette, Tetraspanin CD82 Regulates the Spatiotemporal Dynamics of PKC alpha in Acute Myeloid Leukemia. Scientific Reports, 2016.

2015

  1. Marjon KD, Termini CM, Karlen KL, Saito-Reis C, Soria CE, Lidke KA, Gillette JM. Tetraspanin CD82 regulates bone marrow homing of acute myeloid leukemia by modulating the molecular organization of N-cadherin. Oncogene. 2015.
  2. Valley CC, Arndt-Jovin DJ, Karedla N, Steinkamp MP, Chizhik AI, Hlavacek WS, Wilson BS, Lidke KA, Lidke DS. Enhanced dimerization drives ligand-independent activity of mutant epidermal growth factor receptor in lung cancer. Mol Biol Cell. 2015
  3. Smith CS, Stallinga S, Lidke KA, Rieger B, Grunwald D. Probability-based particle detection that enables threshold-free and robust in vivo single-molecule tracking. Mol Biol Cell. 2015
  4. Nieuwenhuizen RPJ, Bates M, Szymborska A, Lidke KA, Rieger B, Stallinga S. Quantitative Localization Microscopy: Effects of Photophysics and Labeling Stoichiometry. PLoS One. 2015
  5. Valley CC, Liu S, Lidke DS, Lidke KA. Sequential Superresolution Imaging of Multiple Targets Using a Single Fluorophore. Plos One. 2015
  6. Coban O, Zanetti-Dominguez Laura C, Matthews Daniel R, Rolfe Daniel J, Weitsman G, Barber Paul R, Barbeau J, Devauges V, Kampmeier F, Winn M, Vojnovic B, Parker Peter J, Lidke Keith A, Lidke Diane S, Ameer-Beg Simon M, Martin-Fernandez Marisa L, Ng T. Effect of Phosphorylation on EGFR Dimer Stability Probed by Single-Molecule Dynamics and FRET/FLIM. Biophys J. 2015
  7. Broeken J, Johnson H, Lidke DS, Liu S, Nieuwenhuizen RPJ, Stallinga S, Lidke KA, Rieger B. Resolution improvement by 3D particle averaging in localization microscopy. Methods and Applications in Fluorescence. 2015
  8. Schwartz SL, Yan Q, Telmer CA, Lidke KA, Bruchez MP, Lidke DS. Fluorogen-Activating Proteins Provide Tunable Labeling Densities for Tracking FcεRI Independent of IgE. ACS Chemical Biology. 2015

2014

  1. Yan Q, Schwartz SL, Maji S, Huang F, Szent-Gyorgyi C, Lidke DS, Lidke KA, Bruchez MP. Localization Microscopy using Noncovalent Fluorogen Activation by Genetically Encoded Fluorogen-Activating Proteins. Chemphyschem. 2014
  2. Vermehren-Schmaedick A, Krueger W, Jacob T, Ramunno-Johnson D, Balkowiec A, Lidke KA, Vu TQ. Heterogeneous Intracellular Trafficking Dynamics of Brain-Derived Neurotrophic Factor Complexes in the Neuronal Soma Revealed by Single Quantum Dot Tracking. Plos One. 2014
  3. Valley CC, Lidke KA, Lidke DS. The Spatiotemporal Organization of ErbB Receptors: Insights from Microscopy. Csh Perspect Biol. 2014
  4. Termini CM, Cotter ML, Marjon KD, Buranda T, Lidke KA, Gillette JM. The membrane scaffold CD82 regulates cell adhesion by altering α4 integrin stability and molecular density. Mol Biol Cell. 2014
  5. Steinkamp MP, Low-Nam ST, Yang SJ, Lidke KA, Lidke DS, Wilson BS. erbB3 Is an Active Tyrosine Kinase Capable of Homo- and Heterointeractions. Mol Cell Biol. 2014
  6. Liu S, Lidke KA. A Multiemitter Localization Comparison of 3D Superresolution Imaging Modalities. Chemphyschem. 2014
  7. Itano MS, Graus MS, Pehlke C, Wester MJ, Liu P, Lidke KA, Thompson NL, Jacobson K, Neumann AK. Super-resolution imaging of C-type lectin spatial rearrangement within the dendritic cell plasma membrane at fungal microbe contact sites. Frontiers in Physics. 2014

2013

  1. van den Dries K, Schwartz SL, Byars J, Meddens MBM, Bolomini-Vittori M, Lidke DS, Figdor CG, Lidke KA, Cambi A. Dual-color superresolution microscopy reveals nanoscale organization of mechanosensory podosomes. Mol Biol Cell. 2013.
  2. Nieuwenhuizen RPJ, Lidke KA, Bates M, Puig DL, Grunwald D, Stallinga S, Rieger B. Measuring image resolution in optical nanoscopy. Nat Methods. 2013
  3. Liu S, Kromann EB, Krueger WD, Bewersdorf J, Lidke KA. Three dimensional single molecule localization using a phase retrieved pupil function. Opt Express. 2013
  4. Cutler PJ, Malik MD, Liu S, Byars JM, Lidke DS, Lidke KA. Multi-Color Quantum Dot Tracking Using a High-Speed Hyperspectral Line-Scanning Microscope. Plos One. 2013

2012

  1. Spendier K, Lidke KA, Lidke DS, Thomas JL. Single-particle tracking of immunoglobulin E receptors (Fc epsilon RI) in micron-sized clusters and receptor patches. Febs Lett. 2012
  2. Lidke KA. Super resolution for common probes and common microscopes. Nat Methods. 2012
  3. Lidke KA. A New Intercellular Transfer Phenomenon is Uncovered by Three-Dimensional Particle Tracking. Biophys J. 2012
  4. Lidke DS, Lidke KA. Advances in high-resolution imaging - techniques for three-dimensional imaging of cellular structures. J Cell Sci. 2012

2011

  1. Low-Nam ST, Lidke KA, Cutler PJ, Roovers RC, Henegouwen PMPVE, Wilson BS, Lidke DS. ErbB1 dimerization is promoted by domain co-confinement and stabilized by ligand binding. Nat Struct Mol Biol. 2011
  2. Lidke DS, Low-Nam ST, Cutler PJ, Lidke KA. Determining Fc epsilon RI Diffusional Dynamics via Single Quantum Dot Tracking. Methods Mol Biol. 2011
  3. Huang F, Schwartz SL, Byars JM, Lidke KA. Simultaneous multiple-emitter fitting for single molecule super-resolution imaging. Biomed Opt Express. 2011

2010

  1. Spendier K, Carroll-Portillo A, Lidke KA, Wilson BS, Timlin JA, Thomas JL. Distribution and Dynamics of Rat Basophilic Leukemia Immunoglobulin E Receptors (Fc epsilon RI) on Planar Ligand-Presenting Surfaces. Biophys J. 2010
  2. Smith CS, Joseph N, Rieger B, Lidke KA. Fast, single-molecule localization that achieves theoretically minimum uncertainty. Nat Methods. 2010
  3. Carroll-Portillo A, Spendier K, Pfeiffer J, Griffiths G, Li HT, Lidke KA, Oliver JM, Lidke DS, Thomas JL, Wilson BS, Timlin JA. Formation of a Mast Cell Synapse: Fc epsilon RI Membrane Dynamics upon Binding Mobile or Immobilized Ligands on Surfaces. J Immunol. 2010

2009 and older

  1. Hagen GM, Caarls W, Lidke KA, De Vries AHB, Fritsch C, Barisas BG, Arndt-Jovin DJ, Jovin TM. Fluorescence Recovery After Photobleaching and Photoconversion in Multiple Arbitrary Regions of Interest Using a Programmable Array Microscope. Microsc Res Techniq. 2009
  2. Andrews NL, Lidke KA, Pfeiffer JR, Burns AR, Wilson BS, Oliver JM, Lidke DS. Actin restricts Fc epsilon RI diffusion and facilitates antigen-induced receptor immobilization. Nat Cell Biol. 2008
  3. Wynveen A, Lidke KA, Lutsyshyn Y, Halley JW. Possible transmission experiments with low-velocity helium droplets. Phys Rev B. 2007
  4. Lidke DS, Andrews NL, Pfeiffer JR, Jones HDT, Sinclair MB, Haaland DM, Burns AR, Wilson BS, Oliver JM, Lidke KA. Exploring membrane protein dynamics by multicolor single quantum dot imaging using wide field, TIRF, and hyperspectral microscopy. P Soc Photo-Opt Ins. 2007
  5. Hagen GM, Caarls W, Thomas M, Hill A, Lidke KA, Rieger B, Fritsch C, van Geest B, Jovin TM, Arndt-Jovin DJ. Biological applications of an LCoS-based programmable array microscope (PAM). P Soc Photo-Opt Ins. 2007
  6. Post JN, Lidke KA, Rieger B, Arndt-Jovin DJ. One- and two-photon photoactivation of a paGFP-fusion protein in live Drosophila embryos. Febs Lett. 2005
  7. Lidke KA, Wynveen A, Baisch N, Koay C, Giese CF, Halley JW. Phonon mediated helium atom transmission through superfluid helium four. J Low Temp Phys. 2005
  8. Lidke KA, Rieger B, Lidke DS, Jovin TM. The role of photon statistics in fluorescence anisotropy imaging. IEEE T. Image Process. 2005
  9. Lidke KA, Rieger B, Jovin TM, Heintzmann R. Superresolution by localization of quantum dots using blinking statistics. Opt Express. 2005
  10. Lidke DS, Lidke KA, Rieger B, Jovin TM, Arndt-Jovin DJ. Reaching out for signals: filopodia sense EGF and respond by directed retrograde transport of activated receptors. J Cell Biol. 2005
  11. Jares-Erijman E, Giordano L, Spagnuolo C, Lidke K, Jovin TM. Imaging quantum dots switched on and off by photochromic fluorescence resonance energy transfer (pcFRET). Mol Cryst Liq Cryst. 2005
  12. Hanley QS, Lidke KA, Heintzmann R, Arndt-Jovin DJ, Jovin TM. Fluorescence lifetime imaging in an optically sectioning programmable array microscope (PAM). Cytom Part A. 2005
  13. Heintzmann R, Lidke KA, Jovin TM. Double-pass Fourier transform imaging spectroscopy. Opt Express. 2004
  14. Grecco HE, Lidke KA, Heintzmann R, Lidke DS, Spagnuolo C, Martinez OE, Jares-Erijman EA, Jovin TM. Ensemble and single particle photophysical proper-ties (Two-Photon excitation, anisotropy, FRET, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells. Microsc Res Techniq. 2004
  15. Wynveen A, Lidke KA, Williams MC, Giese CF, Halley JW. Dynamics of low-energy helium vapor pulses. Phys Rev E. 2003
  16. Lidke DS, Nagy P, Barisas BG, Heintzmann R, Post JN, Lidke KA, Clayton AHA, Arndt-Jovin DJ, Jovin TM. Imaging molecular interactions in cells by dynamic and static fluorescence anisotropy (rFLIM and emFRET). Biochem Soc T. 2003
  17. Lidke KA, Williams MC, Wynveen A, Halley JW. Gas dynamics of pulsed low energy helium beams. J Low Temp Phys. 2000
  18. Oclock GD, Khaliq MA, Lidke KA. Current Transport through Silicon Oxynitride Films. J Electrochem Soc. 1995